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Illumina HiSeq

Hybridization Capture

Amplicon Capture

Illumina MiSeq

10 – 100s of genes

Advantage: lowest input DNA

requirement

Disadvantages: poorly suited to

detection of copy number changes and

rearrangements

100s to 20,000 genes

Advantage: better suited to detection of

copy number changes and

rearrangements , more sensitive

Disadvantages: higher input DNA

requirement

Ion Torrent PGM

Illumina NextSeq

Next Generation Sequencing Platforms

Marc Ladanyi, M.D, WCLC 2017